i might have these same pains as you do. However, you can do the check, below, to see if we do indeed have the same issue:
With your leg straigthen, firmly curl your big toe up toward you. Touch/press the joint where it hurts. Is there a bubble there? If there is buble there, is it still there when you uncurl (relieve the pressure)? If so, you might have ganglion cyst on your toes.http://orthopedics.about.com/cs/handwristsurgery/a/wristganglion.htm
I had them on my wrists and now on my toes. While it was painful to pop thoses on my wrist, I did it myself. I just popped 3 cysts on my toes. It is very painful. You might want to see your doctor.